Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom.
Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom. Cell Syst. 2025 Feb 19; 16(2):101167.
PMID: 39826551
ROSIE: AI generation of multiplex immunofluorescence staining from histopathology images.
ROSIE: AI generation of multiplex immunofluorescence staining from histopathology images. bioRxiv. 2024 Nov 18.
PMID: 39605711
Combatting superbugs using the evolutionary record of microbial warfare.
Combatting superbugs using the evolutionary record of microbial warfare. Cell Host Microbe. 2024 Jul 10; 32(7):1037-1039.
PMID: 38991497
An evolution-based framework for describing human gut bacteria.
An evolution-based framework for describing human gut bacteria. bioRxiv. 2023 Dec 05.
PMID: 38105970
Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes.
Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes. Elife. 2022 08 17; 11.
PMID: 35976223
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans.
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans. Nature. 2021 07; 595(7865):91-95.
PMID: 34163075
A Microbiota-Directed Food Intervention for Undernourished Children.
A Microbiota-Directed Food Intervention for Undernourished Children. N Engl J Med. 2021 04 22; 384(16):1517-1528.
PMID: 33826814
Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum.
Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum. mSystems. 2020 Jul 28; 5(4).
PMID: 32723790
Understanding the mother-breastmilk-infant "triad".
Understanding the mother-breastmilk-infant "triad". Science. 2020 03 06; 367(6482):1070-1072.
PMID: 32139527
Identifying determinants of bacterial fitness in a model of human gut microbial succession.
Identifying determinants of bacterial fitness in a model of human gut microbial succession. Proc Natl Acad Sci U S A. 2020 02 04; 117(5):2622-2633.
PMID: 31969452
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